SNP Report

Basic Infomation

Name	rs2065576 dbSNP
Location	chr:20,31389009
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 68)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1003521	0.87[AMR][1000 genomes]
rs1007122	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1007123	0.84[AMR][1000 genomes]
rs1007124	0.84[AMR][1000 genomes]
rs1040554	0.86[EUR][1000 genomes]
rs1040555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11167186	1.00[JPT][hapmap]
rs1333469	0.87[AMR][1000 genomes]
rs1569686	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17370942	1.00[JPT][hapmap]
rs1855349	0.81[AMR][1000 genomes]
rs1855350	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883729	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1883730	0.84[AMR][1000 genomes]
rs1997797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2018002	0.81[AMR][1000 genomes]
rs2064350	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2377667	0.84[AMR][1000 genomes]
rs2424895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424899	0.84[AMR][1000 genomes]
rs2424903	0.84[AMR][1000 genomes]
rs2424904	0.84[AMR][1000 genomes]
rs2424905	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2424906	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424907	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2424909	0.87[AMR][1000 genomes]
rs2424913	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424914	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424928	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs242528	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs242536	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs242537	1.00[CHB][hapmap]
rs242538	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs242551	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs2889703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4911105	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4911106	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4911107	0.80[EUR][1000 genomes]
rs4911110	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4911252	0.83[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4911253	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4911256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4911260	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4911261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4911263	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6057647	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6058859	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6058869	0.84[AMR][1000 genomes]
rs6058883	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6058891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6058892	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6058893	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6087420	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6087989	0.83[EUR][1000 genomes]
rs6087995	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6087999	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6119279	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6119281	0.81[AMR][1000 genomes]
rs709046	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs742630	0.84[AMR][1000 genomes]
rs853848	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs853849	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs853853	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs853859	0.80[AMR][1000 genomes]
rs910083	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs993419	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MAPRE1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)