SNP Report
Basic Infomation
| Name | rs709046 dbSNP |
|---|---|
| Location | chr:20,31391229 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1040555 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11167186 | 1.00[JPT][hapmap] |
| rs17370942 | 1.00[JPT][hapmap] |
| rs1997797 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2065576 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424895 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424906 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424907 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424913 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424914 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424915 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424922 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2424928 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs242528 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs242536 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs242537 | 1.00[CHB][hapmap] |
| rs242538 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs242541 | 1.00[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs242551 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2889703 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4911256 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4911261 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4911263 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6057647 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6058883 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6058891 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs73110111 | 1.00[ASN][1000 genomes] |
| rs73114154 | 1.00[ASN][1000 genomes] |
| rs853848 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs853849 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs853853 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAPRE1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014