SNP Report

Basic Infomation

Name	rs6087995 dbSNP
Location	chr:20,31358253
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 54)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1003521	0.88[AMR][1000 genomes]
rs1007122	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1007123	0.85[AMR][1000 genomes]
rs1007124	0.85[AMR][1000 genomes]
rs1040555	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1333469	0.88[AMR][1000 genomes]
rs1569686	0.88[AMR][1000 genomes]
rs1855349	0.82[AMR][1000 genomes]
rs1855350	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1883729	0.88[AMR][1000 genomes]
rs1883730	0.85[AMR][1000 genomes]
rs1997797	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2018002	0.82[AMR][1000 genomes]
rs2064350	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2065576	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2377667	0.85[AMR][1000 genomes]
rs2424895	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2424899	0.85[AMR][1000 genomes]
rs2424903	0.85[AMR][1000 genomes]
rs2424904	0.85[AMR][1000 genomes]
rs2424905	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2424906	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2424907	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2424909	0.88[AMR][1000 genomes]
rs2424913	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2424914	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2424915	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2424922	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2424928	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2889703	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4911105	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4911106	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4911110	0.85[AMR][1000 genomes]
rs4911252	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4911253	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4911256	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4911260	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4911261	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6057647	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6058859	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6058860	0.81[AMR][1000 genomes]
rs6058869	0.85[AMR][1000 genomes]
rs6058883	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6058891	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6058892	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6087420	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6087989	0.84[EUR][1000 genomes]
rs6087992	0.82[EUR][1000 genomes]
rs6087999	0.88[AMR][1000 genomes]
rs6119279	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6119281	0.84[AMR][1000 genomes]
rs742630	0.85[AMR][1000 genomes]
rs910083	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs993419	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
COMMD7	Distal transcriptional regulation
DNMT3B	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)