SNP Report
Basic Infomation
| Name | rs6058880 dbSNP |
|---|---|
| Location | chr:20,31362420 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17123726 | 1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[EUR][1000 genomes] |
| rs4578931 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57641971 | 0.97[AFR][1000 genomes] |
| rs58178200 | 0.91[EUR][1000 genomes] |
| rs59507494 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6057645 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs6057652 | 0.91[EUR][1000 genomes] |
| rs6057659 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[EUR][1000 genomes] |
| rs6058867 | 1.00[EUR][1000 genomes] |
| rs6058876 | 1.00[EUR][1000 genomes] |
| rs6058901 | 0.91[EUR][1000 genomes] |
| rs6119285 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs6119286 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes] |
| rs61550454 | 0.80[AFR][1000 genomes] |
| rs7270085 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[EUR][1000 genomes] |
| rs73904047 | 0.91[EUR][1000 genomes] |
| rs73904049 | 0.91[EUR][1000 genomes] |
| rs73906037 | 1.00[EUR][1000 genomes] |
| rs73906038 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73906061 | 1.00[EUR][1000 genomes] |
| rs8123073 | 1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes] |
| rs853849 | 0.81[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNMT3B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014