SNP Report
Basic Infomation
| Name | rs927107 dbSNP |
|---|---|
| Location | chr:20,31674571 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11167186 | 1.00[JPT][hapmap] |
| rs11696783 | 1.00[CHB][hapmap] |
| rs13037799 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs170287 | 1.00[JPT][hapmap];0.85[EUR][1000 genomes] |
| rs17370942 | 1.00[JPT][hapmap] |
| rs1972200 | 0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1998112 | 1.00[JPT][hapmap] |
| rs2424950 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs370177 | 1.00[JPT][hapmap] |
| rs383753 | 1.00[JPT][hapmap] |
| rs399355 | 1.00[JPT][hapmap] |
| rs403461 | 1.00[JPT][hapmap] |
| rs4911298 | 1.00[JPT][hapmap] |
| rs6057722 | 0.88[EUR][1000 genomes] |
| rs6059075 | 0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs761937 | 1.00[JPT][hapmap] |
| rs8126171 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BPIFB4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| FER1L4 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014