SNP Report
Basic Infomation
| Name | rs566221 dbSNP |
|---|---|
| Location | chr:11,64820283 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897544 | 0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11231929 | 0.85[JPT][hapmap] |
| rs1129195 | 0.83[CHB][hapmap] |
| rs1196043 | 0.81[YRI][hapmap] |
| rs12802176 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1300845 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1706937 | 0.81[YRI][hapmap] |
| rs2282499 | 0.83[CHB][hapmap] |
| rs2458298 | 0.91[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2507814 | 1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3741390 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3759041 | 0.81[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3782094 | 0.89[CHB][hapmap] |
| rs3850946 | 0.83[CEU][hapmap];0.84[YRI][hapmap] |
| rs3850947 | 0.83[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.81[YRI][hapmap] |
| rs476824 | 0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs477539 | 0.85[JPT][hapmap] |
| rs486984 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs488686 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs502333 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs525433 | 0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs533018 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs562590 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.98[GIH][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs613874 | 0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs620981 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs678614 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs947799 | 0.80[CEU][hapmap];0.89[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NAALADL1 | Proximal transcriptional regulation |
| ENSG00000266123 | Proximal transcriptional regulation |
| NAALADL1 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| NAALADL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014