SNP Report

Basic Infomation

Name	rs486984 dbSNP
Location	chr:11,64792254
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10897544	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11227118	0.82[JPT][hapmap]
rs1196048	0.82[JPT][hapmap]
rs12802176	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1300845	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2282498	0.82[JPT][hapmap]
rs2458298	0.87[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2507814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3741390	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3759041	0.96[CEU][hapmap]
rs3782094	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs3802936	0.82[JPT][hapmap]
rs3862374	0.82[JPT][hapmap]
rs476824	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs488686	0.96[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs489489	0.82[JPT][hapmap]
rs502333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs525433	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs533018	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs534236	0.82[JPT][hapmap]
rs548150	0.82[JPT][hapmap]
rs562590	1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs566221	0.96[CEU][hapmap];0.94[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs613874	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs620981	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs653111	0.82[JPT][hapmap]
rs6591869	0.82[JPT][hapmap]
rs678614	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7943007	0.82[JPT][hapmap]
rs947799	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs9971546	0.82[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
SNX15	Proximal transcriptional regulation
SYVN1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)