SNP Report
Basic Infomation
| Name | rs502333 dbSNP |
|---|---|
| Location | chr:11,64793738 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897544 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11227118 | 0.84[JPT][hapmap] |
| rs11227120 | 0.84[JPT][hapmap] |
| rs1196048 | 0.84[JPT][hapmap] |
| rs12802176 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1300845 | 0.94[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2282498 | 0.84[JPT][hapmap] |
| rs2458298 | 0.88[ASW][hapmap];0.87[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2507814 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3741390 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3759041 | 0.96[CEU][hapmap];0.95[GIH][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap] |
| rs3782094 | 0.84[CHB][hapmap];0.84[JPT][hapmap] |
| rs3802936 | 0.84[JPT][hapmap] |
| rs3850947 | 0.98[GIH][hapmap];0.82[TSI][hapmap] |
| rs3862374 | 0.84[JPT][hapmap] |
| rs476824 | 0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs484182 | 0.84[JPT][hapmap] |
| rs486984 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs488686 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs489489 | 0.84[JPT][hapmap] |
| rs525433 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs533018 | 0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs534236 | 0.84[JPT][hapmap] |
| rs548150 | 0.84[JPT][hapmap] |
| rs562590 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs564966 | 0.84[JPT][hapmap] |
| rs566221 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.84[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs613874 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs620981 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs653111 | 0.84[JPT][hapmap] |
| rs6591869 | 0.84[JPT][hapmap] |
| rs678614 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7943007 | 0.84[JPT][hapmap] |
| rs947799 | 0.84[CHB][hapmap];0.84[JPT][hapmap] |
| rs9971546 | 0.84[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SNX15 | Proximal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| FAU | Distal transcriptional regulation |
| MRPL49 | Distal transcriptional regulation |
| SYVN1 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014