SNP Report
Basic Infomation
| Name | rs3850947 dbSNP |
|---|---|
| Location | chr:11,64840865 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1196043 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1206196 | 0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[ASN][1000 genomes] |
| rs12362669 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12363102 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1300845 | 0.83[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap] |
| rs1706937 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2458298 | 0.95[GIH][hapmap];0.84[TSI][hapmap] |
| rs2507814 | 0.81[CEU][hapmap] |
| rs35661464 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3759041 | 0.83[CEU][hapmap];0.98[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs3850946 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4258384 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs488686 | 0.83[CEU][hapmap] |
| rs502333 | 0.98[GIH][hapmap];0.82[TSI][hapmap] |
| rs544944 | 0.99[ASN][1000 genomes] |
| rs562590 | 0.98[GIH][hapmap];0.84[TSI][hapmap] |
| rs566221 | 0.83[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.81[YRI][hapmap] |
| rs769440 | 0.87[AFR][1000 genomes];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDCA5 | Distal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014