SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 11)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1196043	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1206196	1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[ASN][1000 genomes]
rs12363102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1706937	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs35661464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3759041	0.81[EUR][1000 genomes]
rs3850946	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3850947	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4258384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs544944	0.96[ASN][1000 genomes]
rs769440	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDCA5	Proximal transcriptional regulation
NAALADL1	Distal transcriptional regulation
ARL2	Distal transcriptional regulation
SNX15	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)