SNP Report
Basic Infomation
| Name | rs1206196 dbSNP |
|---|---|
| Location | chr:11,64897453 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11227123 | 0.82[YRI][hapmap] |
| rs1129195 | 0.82[CEU][hapmap] |
| rs1152639 | 0.96[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap] |
| rs1196043 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1196045 | 0.96[CEU][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap] |
| rs12362669 | 1.00[JPT][hapmap];0.88[YRI][hapmap];0.86[ASN][1000 genomes] |
| rs12363102 | 0.87[ASN][1000 genomes] |
| rs1706937 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2282499 | 0.82[CEU][hapmap] |
| rs35661464 | 0.87[ASN][1000 genomes] |
| rs3850946 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[ASN][1000 genomes] |
| rs3850947 | 0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[ASN][1000 genomes] |
| rs4258384 | 0.87[ASN][1000 genomes] |
| rs544944 | 0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs769440 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPDYC | Distal transcriptional regulation |
| ENSG00000255200 | Distal transcriptional regulation |
| PGAM1P8 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| ENSG00000255058 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014