SNP Report
Basic Infomation
| Name | rs1196045 dbSNP |
|---|---|
| Location | chr:11,64902738 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1152639 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1195969 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1196043 | 0.96[CEU][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap] |
| rs1196044 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1206196 | 0.96[CEU][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap] |
| rs1706936 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1706937 | 0.96[CEU][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap] |
| rs2957879 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2957880 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3782093 | 1.00[YRI][hapmap] |
| rs61893619 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SYVN1 | Proximal transcriptional regulation |
| ENSG00000229953 | Distal transcriptional regulation |
| AIFM2 | Distal transcriptional regulation |
| ZBTB1 | Distal transcriptional regulation |
| ZBTB25 | Distal transcriptional regulation |
| RAB40C | Distal transcriptional regulation |
| SLFN5 | Distal transcriptional regulation |
| SMEK2 | Distal transcriptional regulation |
| VRK2 | Distal transcriptional regulation |
| ZFAS1 | Distal transcriptional regulation |
| ZNFX1 | Distal transcriptional regulation |
| IL5RA | Distal transcriptional regulation |
| TRNT1 | Distal transcriptional regulation |
| SEPSECS | Distal transcriptional regulation |
| PI4K2B | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ATG2A | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| ENSG00000255200 | Distal transcriptional regulation |
| PGAM1P8 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000222477 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| ENSG00000255058 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| HIGD1AP10 | Distal transcriptional regulation |
| MESDC1 | Distal transcriptional regulation |
| ENSG00000263770 | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014