SNP Report
Basic Infomation
| Name | rs3782093 dbSNP |
|---|---|
| Location | chr:11,65044986 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11605576 | 0.87[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap] |
| rs1196045 | 1.00[YRI][hapmap] |
| rs12420069 | 1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap] |
| rs12420456 | 0.92[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap] |
| rs17583 | 0.90[JPT][hapmap] |
| rs2073800 | 1.00[YRI][hapmap] |
| rs2271448 | 0.80[CEU][hapmap];0.85[JPT][hapmap] |
| rs2277307 | 0.90[JPT][hapmap] |
| rs3825072 | 0.82[ASW][hapmap];0.90[JPT][hapmap] |
| rs3953797 | 0.90[JPT][hapmap] |
| rs58126964 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs61895407 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs61895419 | 0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs681309 | 0.85[MKK][hapmap];1.00[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| POLA2 | Proximal transcriptional regulation |
| NEAT1 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014