SNP Report
Basic Infomation
| Name | rs12420456 dbSNP |
|---|---|
| Location | chr:11,64981837 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11605576 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11605632 | 0.80[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12416930 | 0.83[ASN][1000 genomes] |
| rs12417272 | 0.88[ASN][1000 genomes] |
| rs12420069 | 0.92[CEU][hapmap];0.93[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap] |
| rs17583 | 0.90[JPT][hapmap] |
| rs17881590 | 0.90[ASN][1000 genomes] |
| rs2271448 | 0.92[ASW][hapmap];0.88[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap];0.83[EUR][1000 genomes] |
| rs2277307 | 0.90[JPT][hapmap] |
| rs34007842 | 0.82[ASN][1000 genomes] |
| rs3782093 | 0.92[CEU][hapmap];0.87[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap] |
| rs3825072 | 0.90[JPT][hapmap] |
| rs3953797 | 0.90[JPT][hapmap] |
| rs58858596 | 0.84[ASN][1000 genomes] |
| rs67698652 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPDYC | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| SLC22A20 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014