SNP Report

Basic Infomation

Name	rs17583 dbSNP
Location	chr:11,64950970
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 18)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11605576	0.90[JPT][hapmap]
rs12417272	0.81[ASN][1000 genomes]
rs12420069	0.90[JPT][hapmap]
rs12420456	0.90[JPT][hapmap]
rs12422027	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12800339	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17881590	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17886894	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271448	0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs2277307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34007842	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34281454	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3782093	0.90[JPT][hapmap]
rs3825072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3953797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58858596	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6591178	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7933509	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CAPN1	Proximal transcriptional regulation
ENSG00000254614	Proximal transcriptional regulation
SYVN1	Distal transcriptional regulation
SLC22A20	Distal transcriptional regulation
ARL2	Distal transcriptional regulation
SNX15	Distal transcriptional regulation
VPS51	Distal transcriptional regulation
ENSG00000254501	Distal transcriptional regulation
TM7SF2	Distal transcriptional regulation
ENSG00000255173	Distal transcriptional regulation
ZNHIT2	Distal transcriptional regulation
FAU	Distal transcriptional regulation
MRPL49	Distal transcriptional regulation
EHD1	Distal transcriptional regulation
CAPN1	Distal transcriptional regulation
HIGD1AP10	Distal transcriptional regulation
ENSG00000222477	Distal transcriptional regulation
SPDYC	Distal transcriptional regulation
ENSG00000270117	Distal transcriptional regulation
MALAT1	Distal transcriptional regulation
POLA2	Distal transcriptional regulation
ENSG00000175827	Distal transcriptional regulation
AP5B1	Distal transcriptional regulation
CAPN1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)