SNP Report
Basic Infomation
| Name | rs17886894 dbSNP |
|---|---|
| Location | chr:11,64951839 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12417272 | 0.81[ASN][1000 genomes] |
| rs12422027 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12800339 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17583 | 0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17881590 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2271448 | 0.86[EUR][1000 genomes] |
| rs2277307 | 0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34007842 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs34281454 | 0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3825072 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3953797 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs58858596 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6591178 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7933509 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CAPN1 | Proximal transcriptional regulation |
| ENSG00000254614 | Proximal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| FAU | Distal transcriptional regulation |
| MRPL49 | Distal transcriptional regulation |
| SYVN1 | Distal transcriptional regulation |
| SLC22A20 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| ZNHIT2 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| CAPN1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014