SNP Report
Basic Infomation
| Name | rs1152639 dbSNP |
|---|---|
| Location | chr:11,64915042 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1195969 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1196043 | 0.96[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap] |
| rs1196044 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1196045 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1206196 | 0.96[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap] |
| rs1706936 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1706937 | 0.96[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap] |
| rs2957879 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2957880 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61893619 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000222477 | Proximal transcriptional regulation |
| HIGD1AP10 | Proximal transcriptional regulation |
| ENSG00000223247 | Distal transcriptional regulation |
| SYVN1 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| ENSG00000255200 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014