SNP Report

Basic Infomation

Name	rs1196043 dbSNP
Location	chr:11,64887560
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 15)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1129195	0.82[CEU][hapmap]
rs1152639	0.96[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap]
rs1196045	0.96[CEU][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap]
rs1206196	0.94[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12362669	0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12363102	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1706937	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2282499	0.82[CEU][hapmap]
rs35661464	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3850946	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3850947	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4258384	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs544944	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs566221	0.81[YRI][hapmap]
rs769440	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MRPL49	Proximal transcriptional regulation
ZNHIT2	Proximal transcriptional regulation
CDC42BPG	Distal transcriptional regulation
ARL2	Distal transcriptional regulation
SNX15	Distal transcriptional regulation
CAPN1	Distal transcriptional regulation
ENSG00000254614	Distal transcriptional regulation
POLA2	Distal transcriptional regulation
VPS51	Distal transcriptional regulation
EHD1	Distal transcriptional regulation
SPDYC	Distal transcriptional regulation
ENSG00000255200	Distal transcriptional regulation
PGAM1P8	Distal transcriptional regulation
MALAT1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 7)

eQTL related gene	Source
FAM117A	SCAN
FADS3	SCAN
RAB1B	SCAN
FADS1	SCAN
SCGB1D4	SCAN
SNORD31	SCAN
NCBP2	SCAN