SNP Report
Basic Infomation
| Name | rs1129195 dbSNP |
|---|---|
| Location | chr:11,64882789 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10791813 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11227118 | 0.97[GIH][hapmap];0.87[TSI][hapmap] |
| rs1196043 | 0.82[CEU][hapmap] |
| rs1206196 | 0.82[CEU][hapmap] |
| rs1300845 | 0.83[CHB][hapmap] |
| rs1706937 | 0.82[CEU][hapmap] |
| rs2282498 | 0.97[GIH][hapmap];0.87[TSI][hapmap] |
| rs2282499 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap] |
| rs3782094 | 0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3802936 | 0.85[CEU][hapmap];0.97[GIH][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs488686 | 0.83[CHB][hapmap] |
| rs566221 | 0.83[CHB][hapmap] |
| rs7123226 | 0.83[EUR][1000 genomes] |
| rs7943007 | 0.97[GIH][hapmap];0.87[TSI][hapmap] |
| rs947799 | 0.84[CHB][hapmap] |
| rs9971546 | 0.85[CEU][hapmap];0.97[GIH][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TM7SF2 | Proximal transcriptional regulation |
| ENSG00000254501 | Proximal transcriptional regulation |
| ENSG00000255173 | Proximal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| MAP4K2 | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| CDC42EP2 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| SLC22A20 | Distal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| ENSG00000269290 | Distal transcriptional regulation |
| BATF2 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| ENSG00000255200 | Distal transcriptional regulation |
| PGAM1P8 | Distal transcriptional regulation |
| TM7SF2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014