SNP Report
Basic Infomation
| Name | rs2282499 dbSNP |
|---|---|
| Location | chr:11,64856108 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11227118 | 0.97[GIH][hapmap];0.89[TSI][hapmap] |
| rs1129195 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap] |
| rs1196043 | 0.82[CEU][hapmap] |
| rs1206196 | 0.82[CEU][hapmap] |
| rs1300845 | 0.83[CHB][hapmap] |
| rs1706937 | 0.82[CEU][hapmap] |
| rs2282498 | 0.97[GIH][hapmap];0.89[TSI][hapmap] |
| rs3782094 | 0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap] |
| rs3802936 | 0.85[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap] |
| rs488686 | 0.83[CHB][hapmap] |
| rs566221 | 0.83[CHB][hapmap] |
| rs7943007 | 0.97[GIH][hapmap];0.89[TSI][hapmap] |
| rs947799 | 0.84[CHB][hapmap] |
| rs9971546 | 0.85[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDCA5 | Proximal transcriptional regulation |
| VPS51 | Proximal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| NAALADL1 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ENSG00000187066 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014