SNP Report
Basic Infomation
| Name | rs947799 dbSNP |
|---|---|
| Location | chr:11,64851305 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10791813 | 0.82[ASN][1000 genomes] |
| rs11227118 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs11227120 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs11231929 | 0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap] |
| rs1129195 | 0.84[CHB][hapmap] |
| rs1196048 | 0.92[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1300845 | 0.80[CEU][hapmap];0.89[CHB][hapmap] |
| rs2282498 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs2282499 | 0.84[CHB][hapmap] |
| rs2507814 | 0.80[CHB][hapmap];0.83[JPT][hapmap] |
| rs36057475 | 0.80[ASN][1000 genomes] |
| rs3759041 | 0.80[CEU][hapmap] |
| rs3782094 | 1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs3802936 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
| rs3862374 | 0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.81[TSI][hapmap] |
| rs475089 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs477539 | 0.92[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap] |
| rs484182 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs486984 | 0.84[CHB][hapmap];0.82[JPT][hapmap] |
| rs488686 | 0.80[CEU][hapmap];0.89[CHB][hapmap] |
| rs489489 | 0.92[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs496427 | 0.90[EUR][1000 genomes] |
| rs502333 | 0.84[CHB][hapmap];0.84[JPT][hapmap] |
| rs532373 | 0.88[CEU][hapmap] |
| rs534236 | 0.81[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap] |
| rs548150 | 0.92[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs562590 | 0.84[CHB][hapmap] |
| rs564966 | 0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs566221 | 0.80[CEU][hapmap];0.89[CHB][hapmap] |
| rs653111 | 0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap] |
| rs6591869 | 0.88[CEU][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap] |
| rs7123226 | 0.88[ASN][1000 genomes] |
| rs7130183 | 0.97[ASN][1000 genomes] |
| rs7943007 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs9971546 | 0.82[CHB][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CDCA5 | Proximal transcriptional regulation |
| ZFPL1 | Proximal transcriptional regulation |
| SMC1A | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| NAALADL1 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| ENSG00000254501 | Distal transcriptional regulation |
| TM7SF2 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| ENSG00000255173 | Distal transcriptional regulation |
| ZNHIT2 | Distal transcriptional regulation |
| CDCA5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014