SNP Report
Basic Infomation
| Name | rs534236 dbSNP |
|---|---|
| Location | chr:11,64799998 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 40)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897543 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11227118 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs11227120 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs11231929 | 0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1196048 | 0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.81[ASN][1000 genomes] |
| rs183578 | 0.81[CHB][hapmap] |
| rs2282498 | 0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap] |
| rs240569 | 0.81[CHB][hapmap] |
| rs2507814 | 0.83[JPT][hapmap] |
| rs3782094 | 1.00[JPT][hapmap] |
| rs3802936 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
| rs3862374 | 0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs477539 | 0.88[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs484182 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs486984 | 0.82[JPT][hapmap] |
| rs489489 | 0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.81[ASN][1000 genomes] |
| rs495330 | 0.81[CHB][hapmap] |
| rs496427 | 0.83[ASN][1000 genomes] |
| rs498636 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs502333 | 0.84[JPT][hapmap] |
| rs528941 | 0.81[CHB][hapmap] |
| rs532373 | 0.92[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs548150 | 0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs551292 | 0.81[CHB][hapmap] |
| rs559644 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs564966 | 0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs582580 | 0.81[CHB][hapmap] |
| rs586616 | 0.81[CHB][hapmap] |
| rs596321 | 0.81[CHB][hapmap] |
| rs598241 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs602404 | 0.81[CHB][hapmap] |
| rs615709 | 0.85[CHB][hapmap] |
| rs653111 | 0.93[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs654772 | 0.81[CHB][hapmap] |
| rs6591869 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs660165 | 0.87[CHB][hapmap] |
| rs674981 | 0.81[CHB][hapmap] |
| rs7943007 | 0.94[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap] |
| rs947799 | 0.81[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap] |
| rs9971546 | 0.94[CHB][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| SNX15 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014