SNP Report
Basic Infomation
| Name | rs559644 dbSNP |
|---|---|
| Location | chr:11,64800438 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897543 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11231929 | 0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1196048 | 0.81[ASN][1000 genomes] |
| rs3862374 | 0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs477539 | 0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs484182 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs489489 | 0.81[ASN][1000 genomes] |
| rs496427 | 0.83[ASN][1000 genomes] |
| rs498636 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs532373 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs534236 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs548150 | 0.83[ASN][1000 genomes] |
| rs564966 | 0.81[ASN][1000 genomes] |
| rs598241 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs653111 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6591869 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| SNX15 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014