SNP Report
Basic Infomation
| Name | rs562590 dbSNP |
|---|---|
| Location | chr:11,64803351 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897544 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12802176 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1300845 | 1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];0.81[CHD][hapmap];0.98[GIH][hapmap];0.94[MEX][hapmap];0.83[MKK][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2458298 | 0.94[ASW][hapmap];0.87[CEU][hapmap];0.93[GIH][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2507814 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3741390 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3759041 | 0.96[CEU][hapmap];0.95[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs3782094 | 0.84[CHB][hapmap] |
| rs3850947 | 0.98[GIH][hapmap];0.84[TSI][hapmap] |
| rs476824 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs486984 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs488686 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs502333 | 0.94[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs525433 | 0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs533018 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs566221 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.85[CHD][hapmap];0.98[GIH][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs613874 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs620981 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs678614 | 0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs947799 | 0.84[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| NAALADL1 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| SNX15 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014