SNP Report
Basic Infomation
| Name | rs2458298 dbSNP |
|---|---|
| Location | chr:11,64814813 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897544 | 0.86[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11231929 | 0.81[CEU][hapmap] |
| rs1196048 | 0.81[CEU][hapmap] |
| rs12802176 | 0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1300845 | 0.94[ASW][hapmap];0.91[CEU][hapmap];0.85[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2507814 | 0.95[CEU][hapmap];0.87[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3741390 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs3759041 | 0.91[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs3850947 | 0.95[GIH][hapmap];0.84[TSI][hapmap] |
| rs3862374 | 0.81[CEU][hapmap] |
| rs476824 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs477539 | 0.84[CEU][hapmap] |
| rs486984 | 0.87[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs488686 | 0.91[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs489489 | 0.81[CEU][hapmap] |
| rs502333 | 0.88[ASW][hapmap];0.87[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.94[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs525433 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs533018 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs548150 | 0.81[CEU][hapmap] |
| rs562590 | 0.94[ASW][hapmap];0.87[CEU][hapmap];0.93[GIH][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.94[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs564966 | 0.80[CEU][hapmap] |
| rs566221 | 0.91[CEU][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs613874 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs620981 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs653111 | 0.81[CEU][hapmap] |
| rs678614 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NAALADL1 | Proximal transcriptional regulation |
| ENSG00000187066 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ENSG00000270117 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| NAALADL1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014