SNP Report
Basic Infomation
| Name | rs3759041 dbSNP |
|---|---|
| Location | chr:11,64827087 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12362669 | 0.81[EUR][1000 genomes] |
| rs12363102 | 0.81[EUR][1000 genomes] |
| rs12802176 | 0.86[AMR][1000 genomes] |
| rs1300845 | 1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2458298 | 0.91[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs2507814 | 1.00[CEU][hapmap] |
| rs35661464 | 0.81[EUR][1000 genomes] |
| rs3741390 | 0.86[AMR][1000 genomes] |
| rs3850946 | 0.83[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs3850947 | 0.83[CEU][hapmap];0.98[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs4258384 | 0.81[EUR][1000 genomes] |
| rs476824 | 0.82[EUR][1000 genomes] |
| rs486984 | 0.96[CEU][hapmap] |
| rs488686 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs502333 | 0.96[CEU][hapmap];0.95[GIH][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap] |
| rs533018 | 0.97[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs562590 | 0.96[CEU][hapmap];0.95[GIH][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs566221 | 0.81[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs947799 | 0.80[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NAALADL1 | Proximal transcriptional regulation |
| SAC3D1 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| FAU | Distal transcriptional regulation |
| MRPL49 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014