SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 14)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1196043	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1206196	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[ASN][1000 genomes]
rs12362669	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12363102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1300845	0.83[CEU][hapmap]
rs1706937	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2507814	0.82[CEU][hapmap]
rs35661464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759041	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs3850947	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4258384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs544944	0.97[ASN][1000 genomes]
rs566221	0.83[CEU][hapmap];0.84[YRI][hapmap]
rs769440	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CDCA5	Proximal transcriptional regulation
NAALADL1	Distal transcriptional regulation
CDCA5	Distal transcriptional regulation
ZFPL1	Distal transcriptional regulation
ARL2	Distal transcriptional regulation
SNX15	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)