SNP Report
Basic Infomation
| Name | rs769440 dbSNP |
|---|---|
| Location | chr:11,64889416 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1196043 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1206196 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12362669 | 0.85[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12363102 | 0.85[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1706937 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs35661464 | 0.85[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3850946 | 0.85[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3850947 | 0.87[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4258384 | 0.85[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs544944 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MRPL49 | Proximal transcriptional regulation |
| FAU | Proximal transcriptional regulation |
| ZNHIT2 | Proximal transcriptional regulation |
| RNU4-2 | Distal transcriptional regulation |
| MBP | Distal transcriptional regulation |
| ARF4 | Distal transcriptional regulation |
| MFSD1 | Distal transcriptional regulation |
| ENSG00000240207 | Distal transcriptional regulation |
| ATG2A | Distal transcriptional regulation |
| PPP2R5B | Distal transcriptional regulation |
| CDC42BPG | Distal transcriptional regulation |
| ARL2 | Distal transcriptional regulation |
| SNX15 | Distal transcriptional regulation |
| POLA2 | Distal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| SPDYC | Distal transcriptional regulation |
| ENSG00000254614 | Distal transcriptional regulation |
| CDCA5 | Distal transcriptional regulation |
| ZFPL1 | Distal transcriptional regulation |
| VPS51 | Distal transcriptional regulation |
| SF1 | Distal transcriptional regulation |
| ENSG00000269038 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ENSG00000255200 | Distal transcriptional regulation |
| PGAM1P8 | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| FAU | RNA binding protein mediated regulation |
| SYVN1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014