SNP Report
Name | rs36057475   dbSNP |
---|---|
Location | chr:11,64860914 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11227118 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11227120 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11231929 | 0.83[ASN][1000 genomes] |
rs1196048 | 0.99[ASN][1000 genomes] |
rs2282498 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3782094 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs3802936 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs3862374 | 0.83[ASN][1000 genomes] |
rs477539 | 0.89[ASN][1000 genomes] |
rs489489 | 0.99[ASN][1000 genomes] |
rs496427 | 0.96[ASN][1000 genomes] |
rs498636 | 0.83[ASN][1000 genomes] |
rs548150 | 0.96[ASN][1000 genomes] |
rs564966 | 0.99[ASN][1000 genomes] |
rs653111 | 0.82[ASN][1000 genomes] |
rs7123226 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs7130183 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs7943007 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs947799 | 0.80[ASN][1000 genomes] |
rs9971546 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
VPS51 | Proximal transcriptional regulation |
ENSG00000187066 | Proximal transcriptional regulation |
VPS51 | Distal transcriptional regulation |
ENSG00000254501 | Distal transcriptional regulation |
TM7SF2 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014