SNP Report

Basic Infomation

Name	rs4760692 dbSNP
Location	chr:12,48587549
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 58)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1018973	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10492080	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1074174	0.81[JPT][hapmap]
rs10783231	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10783232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10783233	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11168449	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11168451	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11168455	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11609399	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11612578	0.95[JPT][hapmap]
rs11613485	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12822085	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1476608	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1489111	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs17122565	0.95[JPT][hapmap]
rs17122612	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17122651	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1968071	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2054902	0.85[JPT][hapmap]
rs2258342	0.92[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2409001	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2634679	0.85[JPT][hapmap]
rs2634699	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs2732455	0.92[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2732475	0.83[CEU][hapmap]
rs2732477	0.92[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2732487	0.92[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs3742074	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4075913	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4141065	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4760611	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs4760620	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4760621	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4760683	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs4760685	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4760698	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6580653	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6580656	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6580657	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs726354	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7294641	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7296913	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7305418	1.00[CEU][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7312326	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7313023	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7315258	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7485057	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7485824	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs757556	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7963934	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7969749	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs7971668	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs879242	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs901962	0.85[JPT][hapmap]
rs901963	0.85[JPT][hapmap]
rs901964	0.85[CHB][hapmap];0.85[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000269514	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)