SNP Report

Basic Infomation

Name	rs901962 dbSNP
Location	chr:12,48741219
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 41)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1074174	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10783231	0.81[JPT][hapmap]
rs10783232	0.81[CEU][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap]
rs11168451	0.81[JPT][hapmap]
rs11168455	0.81[CEU][hapmap];0.84[GIH][hapmap]
rs12822085	0.84[GIH][hapmap];0.81[JPT][hapmap]
rs1489111	0.86[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1906717	0.88[CEU][hapmap];0.80[TSI][hapmap]
rs2054902	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2130096	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2258342	0.87[CEU][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2468947	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2468948	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2468950	0.95[EUR][1000 genomes]
rs2634674	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2634679	0.92[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2634699	1.00[JPT][hapmap]
rs2634701	0.80[ASN][1000 genomes]
rs2732443	0.80[ASN][1000 genomes]
rs2732446	0.90[EUR][1000 genomes]
rs2732451	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2732455	0.87[CEU][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2732458	1.00[CEU][hapmap];0.90[GIH][hapmap];0.83[MEX][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.98[EUR][1000 genomes]
rs2732460	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2732464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732474	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2732475	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2732476	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2732477	0.87[CEU][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2732487	0.87[CEU][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2932090	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4760620	0.82[GIH][hapmap];0.81[JPT][hapmap]
rs4760692	0.85[JPT][hapmap]
rs4760698	0.81[CEU][hapmap];0.84[GIH][hapmap]
rs60908321	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6580660	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs7315258	0.82[GIH][hapmap];0.81[JPT][hapmap]
rs7485057	0.81[JPT][hapmap]
rs7969749	0.81[JPT][hapmap]
rs901963	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap]
rs901964	0.86[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZNF641	Proximal transcriptional regulation
ENSG00000257735	Proximal transcriptional regulation
ENSG00000258273	Distal transcriptional regulation
ZNF641	Distal transcriptional regulation
ENSG00000257735	Distal transcriptional regulation
ID1	Distal transcriptional regulation
MIR3193	Distal transcriptional regulation
ENSG00000257763	Distal transcriptional regulation
ZNF641	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)