SNP Report
Basic Infomation
| Name | rs2130096 dbSNP |
|---|---|
| Location | chr:12,48742489 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1074174 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1489111 | 0.80[ASN][1000 genomes] |
| rs2054902 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2258342 | 0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2468947 | 0.88[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2468948 | 0.85[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2468950 | 0.95[EUR][1000 genomes] |
| rs2634674 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2634679 | 0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2634701 | 0.80[ASN][1000 genomes] |
| rs2732443 | 0.80[ASN][1000 genomes] |
| rs2732446 | 0.90[EUR][1000 genomes] |
| rs2732451 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2732455 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2732458 | 0.98[EUR][1000 genomes] |
| rs2732460 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2732464 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2732474 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2732475 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2732476 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2732477 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2732487 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2932090 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs60908321 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs901962 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs901964 | 0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZNF641 | Proximal transcriptional regulation |
| ENSG00000257735 | Proximal transcriptional regulation |
| ENSG00000269514 | Distal transcriptional regulation |
| ZNF641 | Distal transcriptional regulation |
| ENSG00000258273 | Distal transcriptional regulation |
| ENSG00000257735 | Distal transcriptional regulation |
| ENSG00000257763 | Distal transcriptional regulation |
| ZNF641 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014