SNP Report
Basic Infomation
| Name | rs2054902 dbSNP |
|---|---|
| Location | chr:12,48724778 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 43)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1074174 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10783231 | 0.81[JPT][hapmap] |
| rs10783232 | 0.81[CEU][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap] |
| rs11168451 | 0.81[JPT][hapmap] |
| rs11168455 | 0.81[CEU][hapmap];0.84[GIH][hapmap] |
| rs12822085 | 0.84[GIH][hapmap];0.81[JPT][hapmap] |
| rs1489111 | 0.86[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs1906717 | 0.88[CEU][hapmap] |
| rs2130096 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2258342 | 0.84[ASW][hapmap];0.87[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2468947 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2468948 | 0.86[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2468950 | 0.93[EUR][1000 genomes] |
| rs2634674 | 0.85[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2634679 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2634699 | 0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2634701 | 0.87[ASN][1000 genomes] |
| rs2732443 | 0.87[ASN][1000 genomes] |
| rs2732446 | 0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2732451 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2732455 | 0.84[ASW][hapmap];0.87[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2732458 | 1.00[CEU][hapmap];0.90[GIH][hapmap];0.83[MEX][hapmap];0.87[TSI][hapmap];0.95[EUR][1000 genomes] |
| rs2732460 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2732464 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2732474 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2732475 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2732476 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2732477 | 0.92[ASW][hapmap];0.87[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2732487 | 0.84[ASW][hapmap];0.87[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2932090 | 0.95[EUR][1000 genomes] |
| rs4075913 | 0.81[JPT][hapmap] |
| rs4760620 | 0.82[GIH][hapmap];0.81[JPT][hapmap] |
| rs4760692 | 0.85[JPT][hapmap] |
| rs4760698 | 0.81[CEU][hapmap];0.84[GIH][hapmap] |
| rs60908321 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6580660 | 0.81[CEU][hapmap];0.81[JPT][hapmap] |
| rs7315258 | 0.82[GIH][hapmap];0.81[JPT][hapmap] |
| rs7485057 | 0.81[JPT][hapmap] |
| rs7969749 | 0.81[JPT][hapmap] |
| rs901962 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs901963 | 0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap] |
| rs901964 | 0.86[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs9645811 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR10AD1 | Distal transcriptional regulation |
| ZNF641 | Distal transcriptional regulation |
| ENSG00000257735 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014