SNP Report

Basic Infomation

Name	rs2732487 dbSNP
Location	chr:12,48686741
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 55)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10492080	0.85[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap]
rs1074174	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10783231	0.85[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap]
rs10783232	0.93[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs11168451	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs11168455	0.93[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs11609399	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs12822085	0.85[CHB][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap]
rs1476608	0.87[CEU][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap]
rs1489111	0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17122651	0.87[CEU][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap]
rs1968071	0.87[CEU][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap]
rs2054902	0.84[ASW][hapmap];0.87[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2130096	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2258342	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2468947	0.83[ASN][1000 genomes]
rs2468950	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2634679	0.87[CEU][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2634699	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2634701	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2732443	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2732446	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2732451	0.80[AFR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2732455	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732458	0.87[CEU][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2732460	0.88[EUR][1000 genomes]
rs2732464	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2732474	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2732475	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2732476	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2732477	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2932090	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4075913	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4141065	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4760620	0.85[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap];0.83[MKK][hapmap]
rs4760683	0.82[GIH][hapmap];0.83[MEX][hapmap]
rs4760685	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4760692	0.92[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4760698	0.93[CEU][hapmap];0.85[CHB][hapmap];0.83[CHD][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap]
rs60908321	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6580656	0.85[CEU][hapmap];0.85[CHB][hapmap]
rs6580660	0.93[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs726354	0.85[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap]
rs7294641	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7296913	0.86[CEU][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap]
rs7305418	0.92[CEU][hapmap]
rs7315258	0.86[CEU][hapmap];0.85[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap]
rs7485057	0.81[CHB][hapmap];0.81[CHD][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap]
rs757556	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7969749	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs879242	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs901962	0.87[CEU][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs901963	0.87[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap]
rs901964	0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.96[MEX][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9645811	0.96[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000258234	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)