SNP Report
Basic Infomation
| Name | rs726354 dbSNP |
|---|---|
| Location | chr:12,48500334 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 82)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1018973 | 0.92[ASW][hapmap];0.93[CEU][hapmap];0.83[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes] |
| rs10492080 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1074174 | 0.81[CHB][hapmap];0.81[JPT][hapmap] |
| rs10783230 | 0.94[ASN][1000 genomes] |
| rs10783231 | 1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.81[ASN][1000 genomes] |
| rs10783232 | 0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap] |
| rs10875751 | 0.90[ASN][1000 genomes] |
| rs11168451 | 1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs11168455 | 0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap] |
| rs11609399 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11612578 | 0.87[CEU][hapmap];0.95[JPT][hapmap] |
| rs11612970 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs11613485 | 0.92[ASW][hapmap];0.93[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11613781 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12580764 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs12581972 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12822085 | 1.00[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap] |
| rs1476608 | 0.92[ASW][hapmap];0.93[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1489111 | 0.86[CHB][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap] |
| rs17122565 | 0.82[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap] |
| rs17122611 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17122612 | 0.92[ASW][hapmap];0.93[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs17122613 | 0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs17122651 | 0.92[ASW][hapmap];0.93[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1859441 | 0.91[ASW][hapmap];0.86[CEU][hapmap];0.82[LWK][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.80[EUR][1000 genomes] |
| rs1968071 | 0.92[ASW][hapmap];0.93[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2258342 | 0.86[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap] |
| rs2634699 | 0.86[CHB][hapmap];0.80[JPT][hapmap] |
| rs2732455 | 0.85[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap] |
| rs2732477 | 0.85[CHB][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap] |
| rs2732487 | 0.85[CHB][hapmap];0.84[GIH][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap];0.83[MKK][hapmap] |
| rs3742074 | 0.92[ASW][hapmap];0.93[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs3825404 | 0.92[TSI][hapmap] |
| rs4075913 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4141065 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4293182 | 0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4589362 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4760611 | 0.82[ASW][hapmap];0.86[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.96[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs4760620 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4760621 | 0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4760677 | 0.83[EUR][1000 genomes] |
| rs4760683 | 0.87[CEU][hapmap];0.81[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4760685 | 0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs4760692 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4760698 | 0.86[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap] |
| rs57054831 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs57380031 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs57655233 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs58046797 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs58331734 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs59766465 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs60567660 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs60681522 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6580647 | 0.92[TSI][hapmap] |
| rs6580649 | 0.92[TSI][hapmap] |
| rs6580651 | 0.83[EUR][1000 genomes] |
| rs6580653 | 0.81[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6580656 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6580660 | 0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7133249 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72644842 | 0.83[EUR][1000 genomes] |
| rs72644843 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72644844 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs72644845 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72644846 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72644847 | 0.98[EUR][1000 genomes] |
| rs7296913 | 0.92[ASW][hapmap];0.93[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.94[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7305418 | 0.84[CEU][hapmap] |
| rs7305954 | 0.92[TSI][hapmap] |
| rs7312326 | 0.85[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7315258 | 0.84[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.96[TSI][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7485057 | 0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs7485824 | 0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs757556 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7959755 | 0.93[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes] |
| rs7963934 | 0.93[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7967762 | 0.80[CEU][hapmap];0.80[MEX][hapmap];0.96[TSI][hapmap] |
| rs7969749 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7971668 | 0.93[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs879242 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs901964 | 0.86[CHB][hapmap];0.81[JPT][hapmap];0.82[MEX][hapmap] |
| rs9805048 | 0.92[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SENP1 | Proximal transcriptional regulation |
| ENSG00000224934 | Distal transcriptional regulation |
| ASB8 | Distal transcriptional regulation |
| ENSG00000258051 | Distal transcriptional regulation |
| PFKM | Distal transcriptional regulation |
| VDR | Distal transcriptional regulation |
| SENP1 | Distal transcriptional regulation |
| PFKM | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| ASB8 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014