SNP Report

Basic Infomation

Name	rs1489111 dbSNP
Location	chr:12,48679615
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 53)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10492080	0.86[CHB][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap]
rs1074174	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10783231	0.95[CEU][hapmap];0.86[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap]
rs10783232	0.86[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap]
rs11168451	0.95[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs11168455	0.86[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap]
rs11609399	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs12822085	0.95[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs1476608	0.81[JPT][hapmap];0.83[MEX][hapmap]
rs17122651	0.81[JPT][hapmap];0.82[MEX][hapmap]
rs1968071	0.81[JPT][hapmap];0.83[MEX][hapmap]
rs2054902	0.86[CHB][hapmap];0.88[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2130096	0.80[ASN][1000 genomes]
rs2258342	0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2468947	0.83[ASN][1000 genomes]
rs2634679	0.86[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2634685	0.83[CEU][hapmap]
rs2634699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2634701	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732443	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732446	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2732451	0.89[ASN][1000 genomes]
rs2732455	0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2732458	0.82[GIH][hapmap];0.87[MEX][hapmap]
rs2732464	0.80[ASN][1000 genomes]
rs2732474	0.95[ASN][1000 genomes]
rs2732475	0.95[ASN][1000 genomes]
rs2732476	0.96[ASN][1000 genomes]
rs2732477	1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2732487	0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2932091	0.83[CEU][hapmap]
rs4075913	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4141065	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs4760620	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs4760685	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4760692	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs4760698	0.86[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap]
rs60908321	0.84[ASN][1000 genomes]
rs6580656	0.85[CHB][hapmap]
rs6580660	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs726354	0.86[CHB][hapmap];0.81[JPT][hapmap];0.83[MEX][hapmap]
rs7294641	0.84[ASN][1000 genomes]
rs7296913	0.85[JPT][hapmap]
rs7312326	0.81[JPT][hapmap]
rs7315258	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7485057	0.86[CEU][hapmap];0.81[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap]
rs757556	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7969749	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs879242	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs901962	0.86[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs901963	0.81[CHB][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs901964	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645811	0.96[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000258234	Proximal transcriptional regulation
ZNF641	Distal transcriptional regulation
ENSG00000257735	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)