SNP Report
Basic Infomation
| Name | rs2468947 dbSNP |
|---|---|
| Location | chr:12,48718808 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1074174 | 0.86[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1489111 | 0.83[ASN][1000 genomes] |
| rs2054902 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2130096 | 0.88[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2258342 | 0.84[ASN][1000 genomes] |
| rs2468948 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2634674 | 0.84[ASN][1000 genomes] |
| rs2634679 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2634699 | 0.82[ASN][1000 genomes] |
| rs2634701 | 0.83[ASN][1000 genomes] |
| rs2732443 | 0.83[ASN][1000 genomes] |
| rs2732446 | 0.82[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2732451 | 0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2732455 | 0.80[AFR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2732460 | 0.86[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2732464 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2732474 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2732475 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2732476 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2732477 | 0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2732487 | 0.83[ASN][1000 genomes] |
| rs60908321 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs901962 | 0.88[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs901964 | 0.83[ASN][1000 genomes] |
| rs9645811 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| H1FNT | Proximal transcriptional regulation |
| ZNF641 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014