SNP Report

Basic Infomation

Name	rs1074174 dbSNP
Location	chr:12,48696720
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 42)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10492080	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10783231	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs10783232	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs11168455	0.81[CHB][hapmap]
rs12822085	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs1489111	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1906717	0.86[CEU][hapmap]
rs2054902	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2130096	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2258342	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2468947	0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2468948	0.81[AMR][1000 genomes]
rs2634674	0.80[ASN][1000 genomes]
rs2634679	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2634699	0.91[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2634701	0.96[ASN][1000 genomes]
rs2732443	0.96[ASN][1000 genomes]
rs2732446	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2732451	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2732455	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2732458	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2732460	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2732464	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2732474	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2732475	0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2732476	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2732477	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2732487	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2932090	0.82[EUR][1000 genomes]
rs4760620	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4760685	0.81[JPT][hapmap]
rs4760692	0.81[JPT][hapmap]
rs4760698	0.81[CHB][hapmap]
rs60908321	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs726354	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs7294641	0.82[ASN][1000 genomes]
rs7315258	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs7485057	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs901962	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs901963	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs901964	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9645811	0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZNF641	Distal transcriptional regulation
ENSG00000257735	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)