SNP Report

Basic Infomation

Name	rs4760685 dbSNP
Location	chr:12,48520969
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 53)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1018973	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs10492080	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1074174	0.81[JPT][hapmap]
rs10783230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10783231	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs10783232	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap]
rs10875751	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11168451	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11168455	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap]
rs11609399	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11612578	0.95[JPT][hapmap]
rs11613485	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs11613781	0.94[ASN][1000 genomes]
rs12822085	0.95[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap]
rs1476608	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs1489111	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs17122565	0.80[CHD][hapmap];0.95[JPT][hapmap]
rs17122612	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs17122651	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs1968071	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs2258342	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2634699	0.81[CHB][hapmap];0.80[JPT][hapmap]
rs2732455	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs2732477	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs2732487	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs3742074	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs4075913	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4141065	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4760611	0.86[CHD][hapmap];0.95[JPT][hapmap]
rs4760620	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4760621	0.85[ASN][1000 genomes]
rs4760683	0.93[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4760692	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4760698	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap]
rs57655233	0.94[ASN][1000 genomes]
rs58331734	0.94[ASN][1000 genomes]
rs6580653	0.87[ASN][1000 genomes]
rs6580656	0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs6580660	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs726354	0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs72644845	0.94[ASN][1000 genomes]
rs72644846	0.93[ASN][1000 genomes]
rs7296913	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs7312326	1.00[JPT][hapmap]
rs7315258	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7485057	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs7485824	0.87[ASN][1000 genomes]
rs757556	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7963934	1.00[JPT][hapmap]
rs7969749	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7971668	1.00[JPT][hapmap]
rs879242	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs901964	0.81[CHB][hapmap];0.81[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
PFKM	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
ASB8	SCAN
PRPF40B	SCAN
PRKAG1	SCAN