SNP Report
Basic Infomation
| Name | rs4760611 dbSNP |
|---|---|
| Location | chr:12,48421449 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 78)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1018973 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10492080 | 0.82[ASW][hapmap];0.86[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.96[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs10783226 | 0.83[EUR][1000 genomes] |
| rs10783227 | 0.87[EUR][1000 genomes] |
| rs10783231 | 0.90[GIH][hapmap];0.95[JPT][hapmap] |
| rs10783232 | 0.92[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.81[TSI][hapmap] |
| rs11168451 | 0.81[CHB][hapmap];0.90[JPT][hapmap] |
| rs11168455 | 0.92[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap] |
| rs11609399 | 0.86[CEU][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs11612578 | 0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11612970 | 0.89[EUR][1000 genomes] |
| rs11613485 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.96[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs11613781 | 0.81[EUR][1000 genomes] |
| rs12580764 | 0.91[EUR][1000 genomes] |
| rs12581972 | 0.84[EUR][1000 genomes] |
| rs12822085 | 0.89[GIH][hapmap];0.95[JPT][hapmap] |
| rs1476608 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs1635526 | 0.80[EUR][1000 genomes] |
| rs17122565 | 0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17122611 | 0.91[EUR][1000 genomes] |
| rs17122612 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs17122613 | 0.90[EUR][1000 genomes] |
| rs17122651 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs1793931 | 0.82[EUR][1000 genomes] |
| rs1793933 | 0.82[EUR][1000 genomes] |
| rs1859441 | 0.86[CEU][hapmap];0.84[MEX][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs1859444 | 0.86[EUR][1000 genomes] |
| rs1968071 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs1990029 | 0.91[EUR][1000 genomes] |
| rs3742074 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.96[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs3803183 | 0.87[EUR][1000 genomes] |
| rs3803184 | 0.87[EUR][1000 genomes] |
| rs3825404 | 0.88[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs4075913 | 0.85[CEU][hapmap];0.95[JPT][hapmap] |
| rs4141065 | 0.86[CEU][hapmap];0.95[JPT][hapmap] |
| rs4293182 | 0.90[EUR][1000 genomes] |
| rs4589362 | 0.86[EUR][1000 genomes] |
| rs4760620 | 0.82[ASW][hapmap];0.86[CEU][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.92[TSI][hapmap] |
| rs4760677 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4760683 | 0.84[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap] |
| rs4760685 | 0.86[CHD][hapmap];0.95[JPT][hapmap] |
| rs4760692 | 0.81[CHB][hapmap];0.95[JPT][hapmap] |
| rs4760698 | 0.92[GIH][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap] |
| rs57054831 | 0.86[EUR][1000 genomes] |
| rs57380031 | 0.90[EUR][1000 genomes] |
| rs58046797 | 0.86[EUR][1000 genomes] |
| rs58331734 | 0.81[EUR][1000 genomes] |
| rs59766465 | 0.91[EUR][1000 genomes] |
| rs60567660 | 0.86[EUR][1000 genomes] |
| rs60629297 | 0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60681522 | 0.91[EUR][1000 genomes] |
| rs6580647 | 0.88[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs6580649 | 0.88[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs6580651 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6580656 | 0.89[JPT][hapmap] |
| rs6580660 | 0.95[JPT][hapmap] |
| rs7132668 | 0.90[EUR][1000 genomes] |
| rs7133249 | 0.91[EUR][1000 genomes] |
| rs726354 | 0.82[ASW][hapmap];0.86[CEU][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.84[MKK][hapmap];0.96[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs72644841 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72644842 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs72644843 | 0.91[EUR][1000 genomes] |
| rs72644844 | 0.91[EUR][1000 genomes] |
| rs72644845 | 0.81[EUR][1000 genomes] |
| rs7296913 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs7305954 | 0.88[TSI][hapmap];0.91[EUR][1000 genomes] |
| rs7312326 | 0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes] |
| rs7315258 | 0.84[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap] |
| rs7485057 | 0.90[GIH][hapmap];0.95[JPT][hapmap] |
| rs757556 | 0.86[CEU][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs7959755 | 0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7963934 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes] |
| rs7967762 | 0.80[CEU][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs7969749 | 0.86[CEU][hapmap];0.95[JPT][hapmap] |
| rs7971668 | 0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes] |
| rs879242 | 0.86[CEU][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes] |
| rs9651993 | 0.91[EUR][1000 genomes] |
| rs9805048 | 0.88[TSI][hapmap];0.91[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000257955 | Proximal transcriptional regulation |
| TMEM106C | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014