SNP Report

Basic Infomation

Name	rs6580647 dbSNP
Location	chr:12,48403229
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 64)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1018973	0.81[CEU][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes]
rs1034762	0.81[CEU][hapmap]
rs10492080	0.92[TSI][hapmap]
rs10783226	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10783227	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11612578	0.87[CEU][hapmap];0.97[EUR][1000 genomes]
rs11612970	0.85[EUR][1000 genomes]
rs11613485	0.81[CEU][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs12580764	0.88[EUR][1000 genomes]
rs12581972	0.81[EUR][1000 genomes]
rs1476608	0.81[CEU][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs1635526	0.92[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1635528	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1635529	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17122611	0.88[EUR][1000 genomes]
rs17122612	0.81[CEU][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs17122613	0.86[EUR][1000 genomes]
rs17122651	0.81[CEU][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs1793931	0.94[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1793933	0.93[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1793955	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1793956	0.84[ASN][1000 genomes]
rs1859441	0.87[CEU][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes]
rs1859444	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1968071	0.81[CEU][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs1990029	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3742074	0.81[CEU][hapmap];0.92[TSI][hapmap];0.88[EUR][1000 genomes]
rs3803182	0.83[AFR][1000 genomes]
rs3803183	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3803184	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3825404	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4293182	0.86[EUR][1000 genomes]
rs4589362	0.82[EUR][1000 genomes]
rs4760611	0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs4760620	0.88[TSI][hapmap]
rs4760677	0.93[EUR][1000 genomes]
rs4760683	0.88[TSI][hapmap]
rs57054831	0.82[EUR][1000 genomes]
rs57380031	0.86[EUR][1000 genomes]
rs58046797	0.82[EUR][1000 genomes]
rs59766465	0.87[EUR][1000 genomes]
rs60567660	0.82[EUR][1000 genomes]
rs60629297	0.87[EUR][1000 genomes]
rs60681522	0.88[EUR][1000 genomes]
rs6580649	1.00[CEU][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap];0.92[TSI][hapmap];0.95[EUR][1000 genomes]
rs6580651	0.93[EUR][1000 genomes]
rs7132668	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7133249	0.88[EUR][1000 genomes]
rs726354	0.92[TSI][hapmap]
rs72644841	0.97[EUR][1000 genomes]
rs72644842	0.93[EUR][1000 genomes]
rs72644843	0.88[EUR][1000 genomes]
rs72644844	0.88[EUR][1000 genomes]
rs7296913	0.80[CEU][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs7305954	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7312326	0.82[EUR][1000 genomes]
rs7315258	0.88[TSI][hapmap]
rs7959755	0.81[CEU][hapmap];0.93[EUR][1000 genomes]
rs7963934	0.82[EUR][1000 genomes]
rs7967762	0.81[CEU][hapmap];0.88[TSI][hapmap];0.92[EUR][1000 genomes]
rs7971668	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs917055	0.87[CEU][hapmap];0.94[GIH][hapmap];0.83[MEX][hapmap];0.83[MKK][hapmap]
rs9651993	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9805048	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
COL2A1	Proximal transcriptional regulation
ENSG00000257985	Proximal transcriptional regulation
COL2A1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)