SNP Report
Basic Infomation
| Name | rs1635529 dbSNP |
|---|---|
| Location | chr:12,48395102 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1034762 | 0.83[EUR][1000 genomes] |
| rs10783226 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10783227 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11612578 | 0.82[EUR][1000 genomes] |
| rs1635526 | 0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1635528 | 0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1635534 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1635535 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1635536 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1793912 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1793913 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1793915 | 0.85[AMR][1000 genomes] |
| rs1793917 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1793931 | 0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1793933 | 0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1793955 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1793956 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1859441 | 0.81[EUR][1000 genomes] |
| rs1859444 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1990029 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3803182 | 0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs3803183 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3803184 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3825404 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6580647 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6580649 | 0.81[EUR][1000 genomes] |
| rs7132668 | 0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs72644841 | 0.82[EUR][1000 genomes] |
| rs7305954 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs917055 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs9651993 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9805048 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Proximal transcriptional regulation |
| RNU1-5 | Distal transcriptional regulation |
| ENSG00000258203 | Distal transcriptional regulation |
| ENSG00000257985 | Distal transcriptional regulation |
| VDR | Distal transcriptional regulation |
| TMEM106C | Distal transcriptional regulation |
| ENSG00000257955 | Distal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014