SNP Report

Basic Infomation

Name	rs3803184 dbSNP
Location	chr:12,48398002
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 54)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1018973	0.88[EUR][1000 genomes]
rs1034762	0.80[EUR][1000 genomes]
rs10783226	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10783227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11612578	0.92[EUR][1000 genomes]
rs11612970	0.81[EUR][1000 genomes]
rs11613485	0.80[EUR][1000 genomes]
rs12580764	0.82[EUR][1000 genomes]
rs1635526	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1635528	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1635529	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1635534	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1635535	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17122611	0.82[EUR][1000 genomes]
rs17122612	0.82[EUR][1000 genomes]
rs17122613	0.81[EUR][1000 genomes]
rs1793912	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1793913	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1793915	0.81[AMR][1000 genomes]
rs1793917	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1793931	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793933	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793955	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1793956	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1859441	0.90[EUR][1000 genomes]
rs1859444	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1990029	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3742074	0.82[EUR][1000 genomes]
rs3803182	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3803183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3825404	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4293182	0.80[EUR][1000 genomes]
rs4760611	0.87[EUR][1000 genomes]
rs4760677	0.88[EUR][1000 genomes]
rs57380031	0.81[EUR][1000 genomes]
rs59766465	0.81[EUR][1000 genomes]
rs60629297	0.81[EUR][1000 genomes]
rs60681522	0.82[EUR][1000 genomes]
rs6580647	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6580649	0.90[EUR][1000 genomes]
rs6580651	0.88[EUR][1000 genomes]
rs7132668	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7133249	0.82[EUR][1000 genomes]
rs72644841	0.92[EUR][1000 genomes]
rs72644842	0.88[EUR][1000 genomes]
rs72644843	0.82[EUR][1000 genomes]
rs72644844	0.82[EUR][1000 genomes]
rs7305954	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7959755	0.88[EUR][1000 genomes]
rs7967762	0.87[EUR][1000 genomes]
rs7971668	0.82[EUR][1000 genomes]
rs917055	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9651993	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9805048	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
COL2A1	Distal transcriptional regulation
COL2A1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)