SNP Report

Basic Infomation

Name	rs917055 dbSNP
Location	chr:12,48385576
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1034762	0.86[ASW][hapmap];0.93[CEU][hapmap];0.81[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10783227	0.86[CEU][hapmap];0.80[CHB][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11168337	0.80[CHD][hapmap]
rs1621710	0.92[ASN][1000 genomes]
rs1635526	0.92[CEU][hapmap];0.80[CHB][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1635528	0.84[AMR][1000 genomes]
rs1635529	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1635534	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1635535	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1635536	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1635537	0.86[ASN][1000 genomes]
rs1635544	0.88[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1635546	0.82[ASN][1000 genomes]
rs1635547	0.82[ASN][1000 genomes]
rs1635550	0.86[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes]
rs1793911	0.92[ASN][1000 genomes]
rs1793912	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1793913	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1793915	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1793917	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1793923	0.82[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1793924	0.92[ASN][1000 genomes]
rs1793931	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1793933	0.92[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1793955	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1793956	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1859444	0.87[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1990029	0.93[CEU][hapmap]
rs3803183	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3803184	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3825404	0.87[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.83[MEX][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6580647	0.87[CEU][hapmap];0.94[GIH][hapmap];0.83[MEX][hapmap];0.83[MKK][hapmap]
rs6580649	0.87[CEU][hapmap];0.80[GIH][hapmap]
rs7305954	0.94[GIH][hapmap]
rs740024	0.91[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs9805048	0.94[GIH][hapmap]

rSNP related genes

Symbol	Regulation type
COL2A1	Proximal transcriptional regulation
COL2A1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)