SNP Report
Basic Infomation
| Name | rs1635544 dbSNP |
|---|---|
| Location | chr:12,48380031 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168337 | 0.88[CEU][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12721428 | 0.86[JPT][hapmap] |
| rs1621710 | 0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1635534 | 0.87[ASN][1000 genomes] |
| rs1635535 | 0.87[ASN][1000 genomes] |
| rs1635536 | 0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1635537 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1635546 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1635547 | 0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1635550 | 0.82[CHD][hapmap];0.86[JPT][hapmap] |
| rs1635553 | 0.92[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1793911 | 0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1793912 | 0.86[ASN][1000 genomes] |
| rs1793913 | 0.86[ASN][1000 genomes] |
| rs1793915 | 0.85[ASN][1000 genomes] |
| rs1793917 | 0.82[ASN][1000 genomes] |
| rs1793923 | 0.82[CEU][hapmap];0.87[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.83[LWK][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1793924 | 0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1793937 | 0.82[JPT][hapmap] |
| rs1793949 | 0.82[JPT][hapmap] |
| rs2070739 | 0.86[JPT][hapmap] |
| rs2276454 | 0.82[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes] |
| rs2276455 | 0.83[AMR][1000 genomes] |
| rs2276456 | 0.82[CHB][hapmap];0.83[CHD][hapmap];0.86[GIH][hapmap];0.85[JPT][hapmap] |
| rs3829734 | 0.91[ASN][1000 genomes] |
| rs3829736 | 0.88[CEU][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs63118460 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs740024 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs917055 | 0.88[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Proximal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014