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rVarBase
SNP Report
Basic Infomation
Name
rs1793949  
dbSNP
Location
chr:12,48371595
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1635544
0.82[JPT][hapmap]
rs1793937
0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2276458
0.92[CEU][hapmap];0.81[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3829736
0.85[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
COL2A1
Proximal transcriptional regulation
COL2A1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
eQTL related gene
Source
LOC255411
SCAN
ASB8
SCAN
FAM186B
SCAN
DNAJC22
SCAN
PRPF40B
SCAN
SNORA2A
SCAN
PRKAG1
SCAN