SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1034762	0.80[CEU][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs10783227	0.81[CHB][hapmap]
rs11168337	0.93[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12721428	0.91[JPT][hapmap]
rs1635526	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs1635534	0.88[AMR][1000 genomes]
rs1635535	0.88[AMR][1000 genomes]
rs1635536	0.85[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes]
rs1635544	0.82[CHD][hapmap];0.86[JPT][hapmap]
rs1635553	0.90[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1793912	0.88[AMR][1000 genomes]
rs1793913	0.88[AMR][1000 genomes]
rs1793915	0.87[AMR][1000 genomes]
rs1793917	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1793923	0.81[JPT][hapmap]
rs1793931	0.80[CEU][hapmap]
rs1793933	0.85[CEU][hapmap]
rs1793955	0.82[AMR][1000 genomes]
rs1793956	0.84[AMR][1000 genomes]
rs1859444	0.81[CHB][hapmap]
rs1990029	0.85[CEU][hapmap]
rs2070739	0.82[CHD][hapmap];0.91[JPT][hapmap]
rs2276454	0.90[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs2276455	0.87[ASN][1000 genomes]
rs2276456	0.88[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2276457	0.86[ASN][1000 genomes]
rs3825404	0.81[CHB][hapmap]
rs3829736	0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs917055	0.86[CEU][hapmap];0.90[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
COL2A1	Proximal transcriptional regulation
COL2A1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
SNORA2A	SCAN
PRKAG1	SCAN