SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11168337	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1635544	0.83[AMR][1000 genomes]
rs1635546	0.81[AMR][1000 genomes]
rs1635547	0.84[AMR][1000 genomes]
rs1635550	0.87[ASN][1000 genomes]
rs1635553	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1793937	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2276454	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2276456	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2276457	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2276458	0.80[EUR][1000 genomes]
rs3829736	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
COL2A1	Proximal transcriptional regulation
COL2A1	Distal transcriptional regulation
COL2A1	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)