SNP Report
Basic Infomation
| Name | rs2276454 dbSNP |
|---|---|
| Location | chr:12,48376291 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168337 | 0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12721428 | 0.90[JPT][hapmap] |
| rs1635544 | 0.82[CHB][hapmap];0.86[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes] |
| rs1635546 | 0.80[AMR][1000 genomes] |
| rs1635547 | 0.83[AMR][1000 genomes] |
| rs1635550 | 0.90[CHD][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs1635553 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.90[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1793923 | 0.80[GIH][hapmap];0.83[TSI][hapmap] |
| rs1793937 | 1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2070739 | 0.90[JPT][hapmap] |
| rs2276455 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2276456 | 0.83[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2276457 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2276458 | 0.80[EUR][1000 genomes] |
| rs3829736 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs740024 | 0.82[CHB][hapmap];0.81[CHD][hapmap];0.80[GIH][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Distal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014