SNP Report
Basic Infomation
| Name | rs1621710 dbSNP |
|---|---|
| Location | chr:12,48386060 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11168337 | 0.87[EUR][1000 genomes] |
| rs1635534 | 0.87[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1635535 | 0.87[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1635536 | 0.92[ASN][1000 genomes] |
| rs1635537 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1635544 | 0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1635546 | 0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1635547 | 0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1635553 | 0.83[EUR][1000 genomes] |
| rs1793911 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1793912 | 0.85[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1793913 | 0.85[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1793915 | 0.83[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1793917 | 0.92[ASN][1000 genomes] |
| rs1793923 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1793924 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3829734 | 0.80[ASN][1000 genomes] |
| rs3829736 | 0.87[EUR][1000 genomes] |
| rs63118460 | 0.82[EUR][1000 genomes] |
| rs740024 | 0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs917055 | 0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| COL2A1 | Proximal transcriptional regulation |
| COL2A1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014